biochemical_nonlinear_ode

biochemical_linear_ode, a Python code which defines a nonlinear biochemical ordinary differential equation (ODE).

Licensing:

The computer code and data files described and made available on this web page are distributed under the MIT license

Languages:

biochemical_nonlinear_ode is available in a MATLAB version and an Octave version and a Python version.

Related Data and codes:

python_ode, Python codes which sets up various systems of ordinary differential equations (ODE).

References:

1. Angela Martiradonna, Gianpiero Colonna, Fasma Diele,
   GeCo: Geometric conservative nonstandard schemes for biochemical systems,
   Applied Numerical Mathematics,
   2019.

Source Code:

• biochemical_nonlinear_ode.py, the source code.
• biochemical_nonlinear_ode.sh, runs all the tests.
• biochemical_nonlinear_ode.txt, the output file.

• biochemical_nonlinear_ode.png, plots C, N, P and D.