biochemical_nonlinear_ode

biochemical_linear_ode, an Octave code which defines a nonlinear biochemical ordinary differential equation (ODE).

Licensing:

The information on this web page is distributed under the MIT license.

Languages:

biochemical_nonlinear_ode is available in a MATLAB version and an Octave version and a Python version.

Related Data and codes:

biochemical_nonlinear_ode_test

octave_ode, an Octave code which sets up various ordinary differential equations (ODE).

References:

1. Angela Martiradonna, Gianpiero Colonna, Fasma Diele,
   GeCo: Geometric conservative nonstandard schemesfor biochemical systems,
   Applied Numerical Mathematics,
   2019.

Source Code:

• biochemical_nonlinear_conserved.m, returns the value of two quantities that should be conserved.
• biochemical_nonlinear_deriv.m, returns the right hand side of the ODE.
• biochemical_nonlinear_parameters.m, returns parameters of the biochemical nonlinear ODE.
• timestamp.m, prints the YMDHMS date as a timestamp.