biochemical_nonlinear_ode

biochemical_linear_ode, a MATLAB code which sets up and solves a nonlinear biochemical ordinary differential equation (ODE).

Licensing:

The computer code and data files described and made available on this web page are distributed under the MIT license

Languages:

biochemical_nonlinear_ode is available in a MATLAB version and an Octave version and a Python version.

Related Data and codes:

biochemical_nonlinear_ode_test

matlab_ode, MATLAB codes which set up various ordinary differential equations (ODE).

References:

1. Angela Martiradonna, Gianpiero Colonna, Fasma Diele,
   GeCo: Geometric conservative nonstandard schemes for biochemical systems,
   Applied Numerical Mathematics,
   2019.

Source Code:

• biochemical_nonlinear_conserved.m, returns the value of two quantities that should be conserved.
• biochemical_nonlinear_deriv.m, returns the right hand side of the biochemical nonlinear ODE.
• biochemical_nonlinear_parameters.m, returns parameters of the biochemical nonlinear ODE.