glycolysis_ode

glycolysis_ode, a Python code which sets up and solves a pair of ordinary differential equations (ODE) that model the biochemical process of glycolysis, for which a limit cycle exists.

The two variables represent the concentrations of ADP and F6P.

Licensing:

The computer code and data files described and made available on this web page are distributed under the MIT license

Languages:

glycolysis_ode is available in a MATLAB version and a Python version.

Related Data and codes:

python_ode, Python codes which sets up various systems of ordinary differential equations (ODE).

Reference:

1. Evgeni Selkov,
   Self-oscillations in Glycolysis,
   European Journal of Biochemistry,
   Volume 4, 1968, pages 79-86.

Source Code:

• glycolysis_ode.py, the source code.
• glycolysis_ode.sh, runs all the tests.
• glycolysis_ode.txt, the output file.

• glycolysis_solve_ivp_plot.png, a plot of the solution.
• glycolysis_solve_ivp_phase.png, a phase plot.