glycolysis_ode

glycolysis_ode, a MATLAB code which sets up and solves a pair of ordinary differential equations (ODE) that model the biochemical process of glycolysis, for which a limit cycle exists.

The two variables represent the concentrations of ADP and F6P.

Licensing:

The computer code and data files described and made available on this web page are distributed under the MIT license

Languages:

glycolysis_ode is available in a MATLAB version and a Python version.

Related Data and codes:

glycolysis_ode_test

matlab_ode, MATLAB codes which set up various ordinary differential equations (ODE).

Reference:

1. Evgeni Selkov,
   Self-oscillations in Glycolysis,
   European Journal of Biochemistry,
   Volume 4, 1968, pages 79-86.

Source Code:

• glycolysis_deriv.m, defines the right hand side of the ODE.
• glycolysis_equilibrium.m, returns the equilibrium solution of the ODE.
• glycolysis_parameters.m, returns the parameter values of the ODE.