 |
Population models and simulation |
We will read papers from the population genetic literature that discuss simulation of population data or basic theory that allows such simulation.
| 09-08, 09-15 | Hudson, Richard R. (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics application note 18: 337-338. PDF
This is paper is very short and does not contain much except pointing to the program ms (manual). The text below is the foundation for the program. |
| Hudson, Richard R. (1991) Gene genealogies and the coalescent process. Eds. D. Futuyma and J. Antonovics. Oxford Surveys in Evolutionary Biology 7: 1-44 PDF | |
| 09-22 | Slade, P. F., 2000 Simulation of selected genealogies. Theor. Popul. Biol. 57: 35–50. PDF |
| 09-29 | Reeve, J. 2000 Predicting long-term response to selection. Genetical Research 75: 83–94. PDF |
| 10-06 | Rohde D. L. T., S. Olson, and J. T. Chang. 2004. Modelling the recent common ancestry of all living humans. Nature 431: 562-566. +News and Views + Supplements PDF |
| 10-13 | Currat, M., N. Ray, and L. Excoffier. 2004. SPLATCHE: a program to simulate genetic diversity taking into account environmental heterogenity. Molecular Ecology Notes 4: 139-142 PDF Related Poster PDF |
| 10-20 | Ray et al. 2003. Intra-Deme Molecular Diversity in Spatially Expanding Populations. Moecular biology and Evolution 20:76-86. PDF |
| 10-27 | Beaumont et al. Approximate Bayesian Computation in Population Genetics. Genetics 162: 2025–2035 PDF |
| 11-03 | Plagnol and Tavare. 2003. Approximate Bayesian Computation and MCMC. To appear in Proceedings of MCQMC2002, edited by H. Niederreiter. Springer Verlag, 2003. PDF |
| 11-17 | Slatkin, M. 2002. A vectorized method of importance sampling with applications to models of mutation and migration. Theor Popul Biol. 2002 Dec;62(4):339-48. PDF |
| 11-17 | Stephens, M. and P. Donnelly 2000. Inference in molecular population genetics. J. R. Statist. Soc. B: 62: 605-655 PDF |