circadian_ode

circadian_ode, a Python code which sets up and solves a set of 5 ordinary differential equations (ODE) which model the circadian oscillation in the Drosophilia period protein.

Licensing:

The information on this web page is distributed under the MIT license.

Languages:

circadian_ode is available in a MATLAB version and an Octave version and a Python version.

Related Data and Programs:

python_ode, a Python code which sets up various systems of ordinary differential equations (ODE).

Reference:

1. Albert Goldbeter,
   A model for circadian oscillation in the Drosophilia period protein (PER),
   Proceedings of the Royal Society of London, B,
   Volume 261, pages 319-324, 1995.

Source Code:

• circadian_ode.py, the source code.
• circadian_ode.sh, runs all the tests
• circadian_ode.txt, the output file.

• circadian_time.png, a time series plot.
• circadian_phase.png, a phase plane plot.