axon_ode

axon_ode, a Python code which sets up the ordinary differential equations (ODE) for the Hodgkin-Huxley model of an axon.

Licensing:

The computer code and data files described and made available on this web page are distributed under the MIT license

Languages:

axon_ode is available in a MATLAB version and an Octave version and a Python version.

Related Data and codes:

python_ode, Python codes which sets up various systems of ordinary differential equations (ODE).

Reference:

• Alan Hodgkin, Andrew Huxley,
  A quantitative description of membrane current and its application to conduction and excitation in nerve,
  The Journal of Physiology,
  Volume 117, Number 4, pages 500-544, August 1952.

Source Code:

• axon_ode.py, the source code.
• axon_ode.sh, runs all the tests.
• axon_ode.txt, the output file

• axon_euler_v.png, a plot of V(t) over time.
• axon_euler_n.png, a plot of N(t) over time.
• axon_euler_m.png, a plot of M(t) over time.
• axon_euler_h.png, a plot of H(t) over time.

• axon_solve_ivp_v.png, a plot of V(t) over time.
• axon_solve_ivp_n.png, a plot of N(t) over time.
• axon_solve_ivp_m.png, a plot of M(t) over time.
• axon_solve_ivp_h.png, a plot of H(t) over time.