gene_cluster_test

gene_cluster_test, a FORTRAN90 code which calls gene_cluster(), which divides a set of genetic data into clusters.

Licensing:

The computer code and data files described and made available on this web page are distributed under the MIT license

Related Data and Programs:

gene_cluster, a FORTRAN90 code which clusters sets of genetic expression data;

Source Code:

• gene_cluster_test.sh, runs all the tests.
• gene_cluster_test.txt, the output file.

Genetic expression data files include:

• i1039.txt, 1152 lines of data.
• i1650.txt, 180 lines of data.
• i2032.txt, 1481 lines of data.
• i2282.txt, 11016 lines of data.
• i29111.txt, 1031 lines of data.
• i29486.txt, 8526 lines of data.

For data set 1039, there are the following files:

• gene_cluster_1039_input.txt, an input file describing the run to be made;
• gene_cluster_1039.txt, the output file containing the results;
• normal_1039.txt, a table of the energy versus number of clusters, for normalized data;
• normal_1039.png, a PNG image of a plot of the energy versus number of clusters, for normalized data;
• normal2_1039.txt, a table of the energy versus the inverse number of clusters, for normalized data;
• normal2_1039.png, a PNG image of a plot of the energy versus the inverse number of clusters, for normalized data;
• unnormal_1039.txt, a table of the energy versus number of clusters, for unnormalized data;
• unnormal_1039.png, a PNG image of a plot of the energy versus number of clusters, for unnormalized data;
• unnormal2_1039.txt, a table of the energy versus the inverse number of clusters, for unnormalized data;

For data set 1650, there are the following files:

• gene_cluster_1650_input.txt, an input file describing the run to be made;
• gene_cluster_1650.txt, the output file containing the results;
• normal_1650.txt, a table of the energy versus number of clusters, for normalized data;
• normal2_1650.txt, a table of the energy versus the inverse number of clusters, for normalized data;
• unnormal_1650.txt, a table of the energy versus number of clusters, for unnormalized data;
• unnormal2_1650.txt, a table of the energy versus the inverse number of clusters, for unnormalized data;