rcm

rcm, a MATLAB code which computes the Reverse Cuthill McKee (RCM) ordering of the nodes of a graph.

The RCM ordering is frequently used when a matrix is to be generated whose rows and columns are numbered according to the numbering of the nodes. By an appropriate renumbering of the nodes, it is often possible to produce a matrix with a much smaller bandwidth.

The bandwidth of a matrix is computed as the maximum bandwidth of each row of the matrix. The bandwidth of a row of the matrix is essentially the number of matrix entries between the first and last nonzero entries in the row, with the proviso that the diagonal entry is always treated as though it were nonzero.

This library includes a few routines to handle the common case where the connectivity can be described in terms of a triangulation of the nodes, that is, a grouping of the nodes into sets of 3-node or 6-node triangles. The natural description of a triangulation is simply a listing of the nodes that make up each triangle. The library includes routines for determining the adjacency structure associated with a triangulation, and the test problems include examples of how the nodes in a triangulation can be relabeled with the RCM permutation.

Here is a simple example of how reordering can reduce the bandwidth. In our first picture, we have nine nodes:

           5--7--6
           |  | /
        4--8--2
        |  |  |
        9--1--3
      

        * . 1 . . . . 1 1
        . * 1 . . 1 1 1 .
        1 1 * . . . . . .
        . . . * . . . 1 1
        . . . . * . 1 1 .
        . 1 . . . * 1 . .
        . 1 . . 1 1 * . .
        1 1 . 1 1 . . * .
        1 . . 1 . . . . *
      

If we keep the same connectivity graph, but relabel the nodes, we could get a picture like this:

           7--8--9
           |  | /
        3--5--6
        |  |  |
        1--2--4
      

        * 1 1 . . . . . .
        1 * . 1 1 . . . .
        1 . * . 1 . . . .
        . 1 . * . 1 . . .
        . 1 1 . * 1 1 . .
        . . . 1 1 * . 1 1
        . . . . 1 . * 1 .
        . . . . . 1 1 * 1
        . . . . . 1 . 1 *
      

Licensing:

The information on this web page is distributed under the MIT license.

Languages:

rcm is available in a C version and a C++ version and a Fortran90 version and a MATLAB version and an Octave version.

Related Data and Programs:

rcm_test

mesh_bandwidth, a MATLAB code which returns the geometric bandwidth associated with a mesh of elements of any order and in a space of arbitrary dimension.

quadrilateral_mesh_rcm, a MATLAB code which computes the Reverse Cuthill McKee (RCM) reordering for nodes in a mesh of 4-node quadrilaterals.

tet_mesh_rcm, a MATLAB code which reads files describing a tetrahedral mesh of nodes in 3D, and applies the RCM algorithm to produce a renumbering of the tet mesh with a reduced bandwidth.

triangulation_order3, a directory which contains a description and examples of order 3 triangulations.

triangulation_order6, a directory which contains a description and examples of order 6 triangulations.

triangulation_rcm, a MATLAB code which reads files describing a triangulation of nodes in 2D, and applies the RCM algorithm to produce a renumbering of the triangulation with a reduced bandwidth.

Reference:

1. HL Crane, Norman Gibbs, William Poole, Paul Stockmeyer,
   Algorithm 508: Matrix Bandwidth and Profile Reduction,
   ACM Transactions on Mathematical Software,
   Volume 2, Number 4, December 1976, pages 375-377.
2. Alan George, Joseph Liu,
   Computer Solution of Large Sparse Positive Definite Matrices,
   Prentice Hall, 1981,
   ISBN: 0131652745,
   LC: QA188.G46
3. Norman Gibbs,
   Algorithm 509: A Hybrid Profile Reduction Algorithm,
   ACM Transactions on Mathematical Software,
   Volume 2, Number 4, December 1976, pages 378-387.
4. Norman Gibbs, William Poole, Paul Stockmeyer,
   An Algorithm for Reducing the Bandwidth and Profile of a Sparse Matrix,
   SIAM Journal on Numerical Analysis,
   Volume 13, Number 2, April 1976, pages 236-250.
5. John Lewis,
   Algorithm 582: The Gibbs-Poole-Stockmeyer and Gibbs-King Algorithms for Reordering Sparse Matrices,
   ACM Transactions on Mathematical Software,
   Volume 8, Number 2, June 1982, pages 190-194.

Source Code:

• adj_bandwidth.m, computes the bandwidth of an adjacency matrix.
• adj_contains_ij.m, determines if (I,J) is in an adjacency structure.
• adj_insert_ij.m, inserts (I,J) into an adjacency structure.
• adj_perm_bandwidth.m, computes the bandwidth of a permuted adjacency matrix.
• adj_perm_show.m, displays a symbolic picture of a permuted adjacency matrix.
• adj_print.m, prints adjacency information.
• adj_print_some.m, prints some adjacency information.
• adj_set.m, sets up the adjacency information.
• adj_show.m, displays a symbolic picture of an adjacency matrix.
• degree.m, computes the degrees of the nodes in the connected component.
• genrcm.m, finds the reverse Cuthill-Mckee ordering for a general graph.
• graph_01_adj.m, returns the adjacency vector for graph 1.
• graph_01_adj_num.m, returns the number of adjacencies for graph 1.
• i4_sign.m, returns the sign of an I4.
• i4_swap.m, swaps two integer values.
• i4_uniform.m, returns a scaled pseudorandom I4.
• i4col_compare.m, compares two columns of an I4COL.
• i4col_sort_a.m, ascending sorts an I4COL.
• i4col_swap.m, swaps two columns of an I4COL.
• i4mat_print_some.m, prints some of an I4MAT.
• i4mat_transpose_print.m, prints an I4MAT, transposed.
• i4mat_transpose_print_some.m, prints some of the transpose of an I4MAT.
• i4vec_heap_d.m, reorders an I4VEC into a descending heap.
• i4vec_indicator.m, sets an I4VEC to the vector A(I)=I.
• i4vec_print.m, prints an I4VEC.
• i4vec_reverse.m, reverses the elements of an I4VEC.
• i4vec_sort_heap_a.m, ascending sorts an I4VEC.
• level_set.m, generates the connected level structure rooted at a given node.
• level_set_print.m, prints level set information.
• perm_check.m, checks that a vector represents a permutation.
• perm_inverse3.m, produces the inverse of a given permutation.
• perm_uniform.m, selects a random permutation of N objects.
• r82vec_permute.m, permutes an R82VEC.
• r8mat_print_some.m, prints some of an R8MAT.
• r8mat_transpose_print_some.m, prints some of an R8MAT, transposed.
• rcm.m, renumbers a connected component by the reverse Cuthill McKee algorithm.
• root_find.m, finds a pseudo-peripheral node.
• s_len_trim.m, returns the length of a string to the last nonblank.
• sort_heap_external.m, externally sorts a list of items into ascending order.
• triangulation_neighbor_triangles.m, determines triangle neighbors.
• triangulation_order3_adj_count.m, counts adjacencies in a triangulation.
• triangulation_order3_adj_set.m, sets adjacencies in a triangulation.
• triangulation_order3_example2.m, returns an example triangulation.
• triangulation_order3_example2_size.m, returns the size of an example.
• triangulation_order6_adj_count.m, counts adjacencies in a triangulation.
• triangulation_order6_adj_set.m, sets adjacencies in a triangulation.
• triangulation_order6_example2.m, returns an example triangulation.
• triangulation_order6_example2_size.m, returns the size of an example.