Bookmarks


  1. http://www.datagenetics.com/blog.html, Nick Berry's home page.
  2. http://bit-player.org, Brian Hayes's web page (columnist for American Scientist).

  3. http://www.cims.nyu.edu/cmcl/software.html , Courant Mathematics and Computing Laboratory Software.
  4. http://www.netlib.org/na-digest-html/, the NA Digest Archives.
  5. http://www.netlib.org, the NETLIB.
  6. http://software-carpentry.org/, Software Carpentry.

  7. http://rexwordpuzzle.blogspot.com Rex Parker Does the New York Times Crossword Puzzle.
  8. http://www.americanscientist.org/ American Scientist online magazine.
  9. http://www.slate.com, SLATE online magazine.

  10. http://sc.fsu.edu, FSU Department of Scientific Computing.
  11. http://rcc.fsu.edu, RCC, the FSU Research Computing Center.
  12. http://www.lib.fsu.edu the bookless study hall formerly known as the FSU Science library.
  13. http://exchange.fsu.edu, FSU EXCHANGE Webmail (ugh).
  14. http://mail.google.com, Gmail.

  15. AUTO software by Eusebius Doedel for continuation and bifurcation problems in ordinary differential equations: http://indy.cs.concordia.ca/auto/
  16. CSPARSE sparse matrix software by Timothy Davis: http://www.cise.ufl.edu/research/sparse/CSparse
  17. CSPARSE videos by Timothy Davis: http://www.youtube.com/playlist?list=PL5EvFKC69QIyRLFuxWRnH6hIw6e1-bBXB ;
  18. DEAL.II, a finite element library, using quadrilaterals in 2D and hexahedrons in 3D: http://www.dealii.org/ ;
  19. DEAL.II videos (and finite elements and more) by Wolfgang Bangerth: http://www.math.tamu.edu/~bangerth/videos.html ;
  20. DIR3, Delaunay Incremental Refinement in 3D, a 3D meshing tool: http://www.math.cmu.edu/~arand/DIR3/ ;
  21. DISLIN, a plotting library: http://www.mps.mpg.de/dislin/ ;
  22. Featflow, a Computational Fluid Dynamics (CFD) Benchmarking Project: http://www.featflow.de/en/benchmarks.html ;
  23. FEATool, a 2D Finite Element Method Toolbox for MATLAB: http://www.precisesimulation.com/featool/ ;
  24. FENICS, a collection of software for the automatic solution of differential equations using the finite element method: http://fenicsproject.org/ ;
  25. FREEFEM++ is a PDE solver for multiphysics nonlinear systems in 2D and 3D, using the finite element method, with triangular or tetrahedral elements: http://www.freefem.org/ ;
  26. GMSH, a 3D finite element mesh generator: http://geuz.org/gmsh/ ;
  27. GSL, the Gnu Scientific Library: http://www.gnu.org/software/gsl/ ;
  28. HSL, the Harwell Subroutine Library: http://www.hsl.rl.ac.uk/ ;
  29. IFISS, a MATLAB toolbox for solving Poisson, convection-diffusion, Stokes, and Navier-Stokes PDE's: http://www.cs.umd.edu/~elman/ifiss/index.html ;
  30. ImageJ, a very useful image manipulation package: http://rsbweb.nih.gov/ij/ ;
  31. Intrepid, part of the Trilinos package, a library for compatible discretization of Partial Differential Equations: http://trilinos.org/packages/intrepid/ ;
  32. LIBMESH, a library for the numerical simulation of partial differential equations on arbitrary unstructured meshes in 1/2/3D with a variety of finite element types: http://libmesh.sourceforge.net/ ;
  33. LIS, a library of linear iterative solvers, with preconditioning, multiple precision, C/Fortran interface, OpenMP/MPI interface: http://www.ssisc.org/lis/index.en.html;
  34. MEDIT, an OpenGL-based scientific visualization tool, by Pascal Frey: http://www.ann.jussieu.fr/frey/software.html;
  35. MESH2D, Automatic 2D Mesh Generation in MATLAB: http://www.mathworks.com/matlabcentral/fileexchange/25555-mesh2d-automatic-mesh-generation ;
  36. Mesh and grid generation web page of Robert Schneiders: http://www.robertschneiders.de/meshgeneration/meshgeneration.html ;
  37. MeshLab, software for processing and editing unstructured 3D triangular surface meshes: http://meshlab.sourceforge.net/ ;
  38. NaSt3DGP, a parallel 3D flow solver, using finite differences, from the Michael Griebel group at the University of Bonn: http://wissrech.iam.uni-bonn.de/research/projects/NaSt3DGP/index.htm ;
  39. NetCDF software for dataset storage: http://www.unidata.ucar.edu/software/netcdf/ ;
  40. NETGEN, an automatic 3D mesh generator: http://www.hpfem.jku.at/netgen/ ;
  41. NS2D, a MATLAB 2D flow solver, using triangular finite elements, from Jeff Borggaard at Virginia Tech: http://jborggaard.github.io/ns2d/ ;
  42. Octave, a Gnu program that is a numerical computing environment: https://www.gnu.org/software/octave/ ;
  43. OpenFOAM, an open source computational fluid dynamics toolbox for 3D flow including heat transfer, chemical reactions and turbulence: http://www.openfoam.com ;
  44. Paraview, a 3D graphics program: http://www.paraview.org/ ;
  45. SciLab, a numerical computing environment: http://www.scilab.org/ ;
  46. SciPy, a numerical computing environment: http://www.scipy.org/ ;
  47. Slatec, a numerical library: http://www.netlib.org/slatec/index.html ;
  48. the SuiteSparse libraries by Timothy Davis of University of Florida: http://www.cise.ufl.edu/research/sparse/ ;
  49. SuperLU, a direct solver for large sparse linear systems of equations, including sequential, shared memory, and distributed memory versions: http://crd-legacy.lbl.gov/~xiaoye/SuperLU/ ;
  50. TASMANIAN, libraries for high dimensional integration, interpolation, and calibration, including a sparse grid library: http://tasmanian.ornl.gov/ ;
  51. TETGEN, a quality 3D mesh generator and Delaunay triangulator: http://wias-berlin.de/software/tetgen/ ;
  52. Trilinos, an ensemble of solvers for large scale multi-physics problems: http://trilinos.sandia.gov/ ;
  53. TSPLIB, the traveling salesman problem library: http://comopt.ifi.uni-heidelberg.de/software/TSPLIB95/ ;
  54. VirtualBox allows you to run a "guest operating system". In particular, a Windows user can set up a Linux environment: https://www.virtualbox.org/ ;
  55. VisIt, visualization tool: https://wci.llnl.gov/codes/visit/ ;
  56. VisItUsers, the VisIt user community web site: www.visitusers.org/ ;

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Last revised on 25 August 2015.