SPREAD
Locate Tyrosine Residues in a SWISS-PROT file

SPREAD is a FORTRAN77 program which reads a sequence form a SWISS-PROT database file and locates the tyrosine residues.

Languages:

SPREAD is available in a FORTRAN77 version.

Related Data and Programs:

PS_GG_ALIGN, a FORTRAN90 library which implements a profile/sequence global alignment using an affine gap penalty.

PS_LG_ALIGN, a FORTRAN90 library which implements a profile/sequence local alignment using an affine gap penalty.

PS_QG_ALIGN, a FORTRAN90 library which implements a profile/sequence quasiglobal alignment using an affine gap penalty.

READ_ALIGN, a FORTRAN77 program which extracts data from a multiple alignment file for sequences and writes the data to a file suitable for input to DISTANCES.

SPACER, a FORTRAN77 program which reads a file containing a distance matrix and performs a principal component analysis.

SS_GD_ALIGN, a FORTRAN90 library which globally aligns two sequences using a distance matrix.

SS_GG_ALIGN, a FORTRAN90 library which globally aligns two sequences using an affine gap penalty.

SS_LG_ALIGN, a FORTRAN90 library which locally aligns two sequences using an affine gap penalty.

SS_QG_ALIGN, a FORTRAN90 library which quasi-globally aligns two sequences using an affine gap penalty.

Source Code:

• spread.f, the source code.
• spread.sh, commands to compile the source code.

List of Routines:

• MAIN is the main program for SPREAD.
• DBSITE finds tyrosine residues in a sequence read from a file.
• FILE_DELETE deletes a file if it exists.
• GET_UNIT returns a free FORTRAN unit number.
• POSN15 compares a data file site to a table of known tyrosine sulfation sites.
• S_LEN_TRIM returns the length of a string to the last nonblank.
• SCORE scores each potential site in the array.
• TIMESTAMP prints out the current YMDHMS date as a timestamp.

You can go up one level to the FORTRAN77 source codes.