Programs

 
http://popgen.sc.fsu.edu/et/
http://people.sc.fsu.edu/~beerli/programs/
http://popge.sc.fsu.edu








Programs

MIGTREE and MIGDATA (Peter Beerli) a commandline tool to simulate genealogies with and without migration events, and the generate data (DNA sequence data, microsatellite data, allozyme data).




Diverge (Peter Beerli) a simple tool for estimating divergence time of two individuals from different species, integrating over a wide range of possible ancestral population sizes. distributed in source and command line binaries for MacOSX. This program is "user-nasty" and not for the faint of heart.


Diverge3D (Peter Beerli) a simple tool for estimating divergence time of two individuals from different species]. It produces the likelihood surface for two parameters: ancestral population size and divergence time. Distributed in source only. This program is "user-nasty".



Migrate website

Estimation of gene flow and other population genetic parameters.

Direct link to preview-directory of Migrate [maintained]

Simulation programs (migtree ,migdata) Simulation of genetic data (DNA, SNP, microsatellite, allozyme) of 1 to many populations with independent migration rates and population sizes. [maintained]http://people.sc.fsu.edu/~beerli/programs/beerlisim.tar.gz
ET -- eventtree (Michal Palczewski) a tree drawing program to visualize migration events, bootstrap support, mutation events on trees using an extended NEWICK format (MIGRATE creates trees that can be read by this program)http://popgen.sc.fsu.edu/et/
http://people.sc.fsu.edu/~beerli/programs/bayes-diverge.tar.gz

Diverge -- a simple divergence estimator for two sequences exploring different ancestral population sizes. [not maintained]

http://people.sc.fsu.edu/~beerli/programs

Diverge3D -- a simple divergence estimator for two sequences exploring different ancestral population sizes. [not maintained]

click on icon

TPSC Estimation of gene flow using the Transmission Probability Structured Coalescence (see our paper Palczewski and Beerli 2013). http://people.sc.fsu.edu/~beerli/programs/tpsc.tar.gz