optimization_biological_test

optimization_biological_test, a MATLAB code which calls optimization_biological(), which minimizes a given cost functional of a biological model using optimal control, based on work by Suzanne Lenhart and John Workman.

Licensing:

The computer code and data files made available on this web page are distributed under the MIT license

Related Data and Programs:

optimization_biological, a MATLAB code which minimizes a given cost functional of a biological model using optimal control, based on work by Suzanne Lenhart and John Workman.

Source Code:

• optimization_biological_test.m, calls all the tests;
• optimization_biological_test.sh, runs all the tests;
• optimization_biological_test.txt, the output file;

• test01.m, compares two specified control functions used for a single forward and backward integration for x and lambda.
• lam_u1.png
• lam_u2.png
• x_u1.png
• x_u2.png

• test02.m, compares two specified control functions used for two forward and backward integration steps for x and lambda. On the second step, the original control is updated using the gradient.
• lam_u1_step1.png
• lam_u1_step2.png
• lam_u2_step1.png
• lam_u2_step2.png
• x_u1_step1.png
• x_u1_step2.png
• x_u2_step1.png
• x_u2_step2.png