# include # include # include # include # include # include using namespace std; # include "asa266.hpp" int main ( ); void test01 ( ); void test02 ( ); void test03 ( ); void test04 ( ); void test05 ( ); void test06 ( ); void test07 ( ); void test08 ( ); void test085 ( ); void test09 ( ); void test10 ( ); void timestamp ( ); //****************************************************************************80 int main ( ) //****************************************************************************80 // // Purpose: // // ASA266_TEST tests the ASA266 library. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { timestamp ( ); cout << "\n"; cout << "ASA266_TEST:\n"; cout << " C++ version\n"; cout << " Test the ASA266 library.\n"; test01 ( ); test02 ( ); test03 ( ); test04 ( ); test05 ( ); test06 ( ); test07 ( ); test08 ( ); test085 ( ); test09 ( ); test10 ( ); // // Terminate. // cout << "\n"; cout << "ASA266_TEST:\n"; cout << " Normal end of execution.\n"; cout << "\n"; timestamp ( ); return 0; } //****************************************************************************80 void test01 ( ) //****************************************************************************80 // // Purpose: // // TEST01 tests ALNORM, NORMP, NPROB. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { double ccdf1; double ccdf2; double ccdf3; double cdf1; double cdf2; double cdf3; int i; int ntest = 16; double pdf2; double pdf3; int upper; double x; cout << "\n"; cout << "TEST01\n"; cout << " ALNORM,\n"; cout << " NORMP, and\n"; cout << " NPROB are routines that compute the cumulative\n"; cout << " density function for the normal distribution.\n"; cout << "\n"; cout << " X CDF1 1-CDF1\n"; cout << " CDF2 1-CDF2 PDF2\n"; cout << " CDF3 1-CDF3 PDF3\n"; for ( i = 0; i < ntest; i++ ) { x = 3.0 * ( double ) ( i ) / ( double ) ( ntest - 1 ); upper = 0; cdf1 = alnorm ( x, upper ); upper = 1; ccdf1 = alnorm ( x, upper ); normp ( x, &cdf2, &ccdf2, &pdf2 ); nprob ( x, &cdf3, &ccdf3, &pdf3 ); cout << "\n"; cout << setw(14) << x << setw(14) << cdf1 << setw(14) << ccdf1 << "\n"; cout << " " << setw(14) << cdf2 << setw(14) << ccdf2 << setw(14) << pdf2 << "\n"; cout << " " << setw(14) << cdf3 << setw(14) << ccdf3 << setw(14) << pdf3 << "\n"; } return; } //****************************************************************************80 void test02 ( ) //****************************************************************************80 // // Purpose: // // TEST02 tests PPND, PPND16. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { double cdf; int i; int ifault; int ntest = 9; double x1; double x2; ifault = 0; cout << "\n"; cout << "TEST02\n"; cout << " PPND,\n"; cout << " PPND16 compute the percentage \n"; cout << " points of the normal distribution.\n"; cout << "\n"; cout << " CDF PPND(CDF) PPND16(CDF)\n"; cout << "\n"; for ( i = 1; i <= ntest; i++ ) { cdf = ( double ) ( i ) / ( double ) ( ntest + 1 ); x1 = ppnd ( cdf, &ifault ); x2 = ppnd16 ( cdf, &ifault ); cout << setw(14) << cdf << setw(14) << x1 << setw(14) << x2 << "\n"; } return; } //****************************************************************************80 void test03 ( ) //****************************************************************************80 // // Purpose: // // TEST03 tests DIGAMMA, R8_PSI. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { int i; int ntest = 10; double x; cout << "\n"; cout << "TEST03\n"; cout << " digamma(X) = d ( Log ( Gamma ( X ) ) ) / dX.\n"; cout << "\n"; cout << " DIGAMMA and\n"; cout << " R8_PSI compute the digamma function:\n"; cout << "\n"; cout << " X DIGAMMA R8_PSI\n"; cout << "\n"; for ( i = 1; i <= ntest; i++ ) { x = ( double ) ( i ) / ( double ) ( ntest ); cout << setw(14) << x << setw(14) << digamma ( x ) << setw(14) << r8_psi ( x ) << "\n"; } return; } //****************************************************************************80 void test04 ( ) //****************************************************************************80 // // Purpose: // // TEST04 tests TRIGAMMA. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { int i; int ifault; int ntest = 10; double t; double x; cout << "\n"; cout << "TEST04\n"; cout << " TRIGAMMA computes the trigamma function:\n"; cout << " trigamma(X) = d^2 ( Log ( Gamma ( X ) ) ) / dX^2.\n"; cout << "\n"; cout << " X TRIGAMMA\n"; cout << "\n"; for ( i = 1; i <= ntest; i++ ) { x = ( double ) ( i ) / ( double ) ( ntest ); t = trigamma ( x, &ifault ); cout << setw(14) << x << setw(14) << t << "\n"; } return; } //****************************************************************************80 void test05 ( ) //****************************************************************************80 // // Purpose: // // TEST05 tests ALNGAM, ALOGAM, R8_GAMMA_LOG, LNGAMMA; // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { int i; int ifault; double log1; double log2; double log3; double log4; int ntest = 10; double x; ifault = 0; cout << "\n"; cout << "TEST05\n"; cout << " ALNGAM\n"; cout << " ALOGAM,\n"; cout << " R8_GAMMA_LOG, and\n"; cout << " LNGAMMA compute the logarithm of the gamma function.\n"; cout << "\n"; cout << " X ALNGAM ALOGAM R8_GAMMA_LOG LNGAMMA\n"; cout << "\n"; for ( i = 1; i <= ntest; i++ ) { x = ( double ) ( i ) / ( double ) ( ntest ); log1 = alngam ( x, &ifault ); log2 = alogam ( x, &ifault ); log3 = r8_gamma_log ( x ); log4 = lngamma ( x, &ifault ); cout << setw(14) << x << setw(14) << log1 << setw(14) << log2 << setw(14) << log3 << setw(14) << log4 << "\n"; } return; } //****************************************************************************80 void test06 ( ) //****************************************************************************80 // // Purpose: // // TEST06 tests GAMAIN, GAMMDS, GAMMAD. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { double g1; double g2; double g3; int i; int ifault; int j; int ntest = 10; double p; double x; ifault = 0; cout << "\n"; cout << "TEST06\n"; cout << " GAMAIN, \n"; cout << " GAMMDS and \n"; cout << " GAMMAD compute the incomplete Gamma integral.\n"; cout << "\n"; cout << " X P GAMMDS GAMMAD GAMAIN\n"; cout << "\n"; for ( i = 1; i <= ntest; i++ ) { x = ( double ) ( i ) / ( double ) ( ntest ); cout << "\n"; for ( j = 1; j <= ntest; j++ ) { p = ( double ) ( j ) / ( double ) ( ntest ); g1 = gammds ( x, p, &ifault ); if ( ifault != 0 ) { g1 = -99.0; } g2 = gammad ( x, p, &ifault ); if ( ifault != 0 ) { g2 = -99.0; } g3 = gamain ( x, p, &ifault ); if ( ifault != 0 ) { g3 = - 99.0; } cout << setw(14) << x << setw(14) << p << setw(14) << g1 << setw(14) << g2 << setw(14) << g3 << "\n"; } } return; } //****************************************************************************80 void test07 ( ) //****************************************************************************80 // // Purpose: // // TEST07 tests PPCHI2. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { double cdf; double gg; int i; int ifault; int j; int nitest = 9; int njtest = 9; double v; double x1; ifault = 0; cout << "\n"; cout << "TEST07\n"; cout << " PPCHI2 computes the percentage points\n"; cout << " of the chi squared distribution.\n"; cout << "\n"; cout << " CDF PPCHI2(CDF)\n"; cout << "\n"; for ( j = 1; j <= njtest; j++ ) { v = ( double ) ( j ); cout << "\n"; cout << " For Chi^2 parameter value = " << v << "\n"; cout << "\n"; for ( i = 1; i <= nitest; i++ ) { cdf = ( double ) ( i ) / ( double ) ( nitest + 1 ); gg = alngam ( v / 2.0, &ifault ); x1 = ppchi2 ( cdf, v, gg, &ifault ); cout << setw(14) << cdf << setw(14) << x1 << "\n"; } } return; } //****************************************************************************80 void test08 ( ) //****************************************************************************80 // // Purpose: // // TEST08 tests DIRICHLET_ESTIMATE, DIRICHLET_MEAN, DIRICHLET_VARIANCE. // // Discussion: // // Canned data is used. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { # define ELEM_NUM 3 # define SAMPLE_NUM 23 double *alpha; double alpha_sum; double aminus; double aplus; int elem_i; int elem_num = ELEM_NUM; double eps; double *g; int ifault; int init; double *mean; int niter; double rlogl; double s; int sample_num = SAMPLE_NUM; double *v; double vari; double *variance; double x[SAMPLE_NUM*ELEM_NUM] = { 0.178, 0.162, 0.083, 0.087, 0.078, 0.040, 0.049, 0.100, 0.075, 0.084, 0.060, 0.089, 0.050, 0.073, 0.064, 0.085, 0.094, 0.014, 0.060, 0.031, 0.025, 0.045, 0.0195, 0.346, 0.307, 0.448, 0.474, 0.503, 0.456, 0.363, 0.317, 0.394, 0.445, 0.435, 0.418, 0.485, 0.378, 0.562, 0.465, 0.388, 0.449, 0.544, 0.569, 0.491, 0.613, 0.526, 0.476, 0.531, 0.469, 0.439, 0.419, 0.504, 0.588, 0.583, 0.531, 0.471, 0.505, 0.493, 0.465, 0.549, 0.374, 0.450, 0.518, 0.537, 0.396, 0.400, 0.484, 0.342, 0.4545 }; cout << "\n"; cout << "TEST08\n"; cout << " For samples of a Dirichlet PDF,\n"; cout << " DIRICHLET_ESTIMATE estimates the parameters.\n"; cout << " DIRICHLET_MEAN finds the means;\n"; cout << " DIRICHLET_VARIANCE finds the variances;\n"; r8mat_print ( sample_num, elem_num, x, " Sampled data:" ); // // Compute the observed averages. // mean = r8col_mean ( sample_num, elem_num, x ); variance = r8col_variance ( sample_num, elem_num, x ); cout << "\n"; cout << " Observed means, variances are:\n"; cout << "\n"; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { cout << setw(6) << elem_i << setw(14) << mean[elem_i] << setw(14) << variance[elem_i] << "\n"; } init = 1; alpha = new double[elem_num]; g = new double[elem_num]; v = new double[elem_num*elem_num]; dirichlet_estimate ( elem_num, sample_num, x, sample_num, init, alpha, rlogl, v, g, niter, s, eps, ifault ); if ( ifault != 0 ) { cout << "\n"; cout << "WARNING!\n"; cout << " DIRICHLET_ESTIMATE error code:\n"; cout << " IFAULT = " << ifault << "\n"; } cout << "\n"; cout << " Index, Estimate, Lower Limit, Upper Limit:\n"; cout << "\n"; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { vari = v[elem_i+elem_i*elem_num]; aminus = alpha[elem_i] - 1.96 * sqrt ( vari ); aplus = alpha[elem_i] + 1.96 * sqrt ( vari ); cout << setw(6) << elem_i << setw(14) << alpha[elem_i] << setw(14) << aminus << setw(14) << aplus << "\n"; } delete [] mean; delete [] variance; mean = dirichlet_mean ( elem_num, alpha ); variance = dirichlet_variance ( elem_num, alpha ); cout << "\n"; cout << " Expected means, variances are:\n"; cout << "\n"; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { cout << setw(6) << elem_i << setw(14) << mean[elem_i] << setw(14) << variance[elem_i] << "\n"; } alpha_sum = r8vec_sum ( elem_num, alpha ); cout << "\n"; cout << " Alpha sum is " << alpha_sum << "\n"; cout << "\n"; cout << " NORMALIZED VALUES:\n"; cout << " Index, Estimate, Lower Limit, Upper Limit:\n"; cout << "\n"; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { vari = v[elem_i+elem_i*elem_num]; aminus = ( alpha[elem_i] - 1.96 * sqrt ( vari ) ) / alpha_sum; aplus = ( alpha[elem_i] + 1.96 * sqrt ( vari ) ) / alpha_sum; cout << setw(6) << elem_i << setw(14) << alpha[elem_i] / alpha_sum << setw(14) << aminus << setw(14) << aplus << "\n"; } cout << "\n"; cout << " Log likelikhood function = " << rlogl << "\n"; delete [] alpha; delete [] g; delete [] mean; delete [] v; delete [] variance; return; # undef ELEM_NUM # undef SAMPLE_NUM } //****************************************************************************80 void test085 ( ) //****************************************************************************80 // // Purpose: // // TEST085 tests GAMMA_SAMPLE. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { double a; double b; int rep; int rep_num = 5; int seed; int test; int test_num = 5; double x; cout << "\n"; cout << "TEST085\n"; cout << " GAMMA_SAMPLE samples a Gamma distribution.\n"; seed = 123456789; for ( test = 1; test <= test_num; test++ ) { a = r8_uniform_ab ( 0.1, 2.0, seed ); b = r8_uniform_ab ( 0.1, 2.0, seed ); cout << "\n"; cout << " A = " << a << ", B = " << b << "\n"; for ( rep = 1; rep <= rep_num; rep++ ) { x = gamma_sample ( a, b, seed ); cout << " " << setw(2) << rep << " " << setw(14) << x << "\n"; } } return; } //****************************************************************************80 void test09 ( ) //****************************************************************************80 // // Purpose: // // TEST09 tests DIRICHLET_ESTIMATE, _MEAN, _VARIANCE, _SAMPLE. // // Discussion: // // Data is generated by sampling a distribution with known parameters. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { # define ELEM_NUM 3 # define SAMPLE_NUM 1000 double alpha[ELEM_NUM] = { 3.22, 20.38, 21.68 }; double alpha_sum; double aminus; double aplus; int elem_i; int elem_num = ELEM_NUM; double eps; double *g; int ifault; int init; double *mean; int niter; double rlogl; double s; int sample_i; int sample_num = SAMPLE_NUM; int seed; double *v; double vari; double *variance; double *x_sample; double *x; seed = 123456789; cout << "\n"; cout << "TEST09\n"; cout << " For a Dirichlet distribution,\n"; cout << " DIRICHLET_SAMPLE samples;\n"; cout << " DIRICHLET_MEAN finds the means;\n"; cout << " DIRICHLET_VARIANCE finds the variances;\n"; cout << " DIRICHLET_ESTIMATE estimates the parameters.\n"; // // Report. // r8vec_print ( elem_num, alpha, " Distribution parameters:" ); mean = dirichlet_mean ( elem_num, alpha ); variance = dirichlet_variance ( elem_num, alpha ); cout << "\n"; cout << " Distribution means, variances are:\n"; cout << "\n"; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { cout << setw(6) << elem_i << setw(14) << mean[elem_i] << setw(14) << variance[elem_i] << "\n"; } // // Sample the distribution. // x_sample = new double[sample_num*elem_num]; cout << "\n"; cout << " Number of samples is " << sample_num << "\n"; for ( sample_i = 0; sample_i < sample_num; sample_i++ ) { x = dirichlet_sample ( elem_num, alpha, seed ); for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { x_sample[sample_i+elem_i*sample_num] = x[elem_i]; } delete [] x; } // // Print some results. // cout << "\n"; cout << " First few samples:\n"; cout << "\n"; for ( sample_i = 0; sample_i < i4_min ( sample_num, 10 ); sample_i++ ) { cout << setw(6) << sample_i; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { cout << setw(14) << x_sample[sample_i+elem_i*sample_num]; } cout << "\n"; } // // Compute means, variances. // delete [] mean; delete [] variance; mean = r8col_mean ( sample_num, elem_num, x_sample ); variance = r8col_variance ( sample_num, elem_num, x_sample ); cout << "\n"; cout << " Observed means, variances are:\n"; cout << "\n"; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { cout << setw(6) << elem_i << setw(14) << mean[elem_i] << setw(14) << variance[elem_i] << "\n"; } // // Destroy the values of ALPHA. // for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { alpha[elem_i] = 0.0; } // // Try to recover the values of ALPHA. // init = 1; v = new double[elem_num*elem_num]; g = new double[elem_num]; dirichlet_estimate ( elem_num, sample_num, x_sample, sample_num, init, alpha, rlogl, v, g, niter, s, eps, ifault ); if ( ifault != 0 ) { cout << "\n"; cout << "Warning!\n"; cout << " DIRICHLET_ESTIMATE error code:\n"; cout << " IFAULT = " << ifault << "\n"; } cout << "\n"; cout << " Index, Estimate, Lower Limit, Upper Limit:\n"; cout << "\n"; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { vari = v[elem_i+elem_i*elem_num]; aminus = alpha[elem_i] - 1.96 * sqrt ( vari ); aplus = alpha[elem_i] + 1.96 * sqrt ( vari ); cout << setw(6) << elem_i << setw(14) << alpha[elem_i] << setw(14) << aminus << setw(14) << aplus << "\n"; } alpha_sum = r8vec_sum ( elem_num, alpha ); cout << "\n"; cout << " Alpha sum is " << alpha_sum << "\n"; cout << "\n"; cout << " NORMALIZED VALUES:\n"; cout << " Index, Estimate, Lower Limit, Upper Limit:\n"; cout << "\n"; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { vari = v[elem_i+elem_i*elem_num]; aminus = ( alpha[elem_i] - 1.96 * sqrt ( vari ) ) / alpha_sum; aplus = ( alpha[elem_i] + 1.96 * sqrt ( vari ) ) / alpha_sum; cout << setw(6) << elem_i << setw(14) << alpha[elem_i] / alpha_sum << setw(14) << aminus << setw(14) << aplus << "\n"; } cout << "\n"; cout << " Log likelikhood function = " << rlogl << "\n"; delete [] mean; delete [] v; delete [] variance; delete [] x_sample; return; # undef ELEM_NUM # undef SAMPLE_NUM } //****************************************************************************80 void test10 ( ) //****************************************************************************80 // // Purpose: // // TEST10 tests DIRICHLET_MIX_SAMPLE, _MEAN, _VARIANCE. // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 05 June 2013 // // Author: // // John Burkardt // { # define COMP_NUM 3 # define COMP_MAX 3 # define ELEM_NUM 3 # define SAMPLE_NUM 200 double a[ELEM_NUM]; double alpha[COMP_MAX*ELEM_NUM] = { 0.05, 0.85, 0.00, 0.20, 0.10, 0.50, 0.75, 0.05, 0.50 }; int comp_max = COMP_MAX; int comp_num = COMP_NUM; int *comp_sample; int comp_i; double comp_weight[COMP_NUM] = { 3.0, 2.0, 1.0 }; int elem_i; int elem_num = ELEM_NUM; double *mean; int sample_i; int sample_num = SAMPLE_NUM; int seed; double *variance; double *x; double *x_sample; seed = 123456789; cout << "\n"; cout << "TEST10\n"; cout << " For a Dirichlet mixture distribution,\n"; cout << " DIRICHLET_MIX_SAMPLE samples;\n"; cout << " DIRICHLET_MIX_MEAN computes means;\n"; cout << " DIRICHLET_MIX_VARIANCE computes variances.\n"; // // Report. // r8vec_print ( comp_num, comp_weight, " Component weight:" ); cout << "\n"; cout << " Component Parameters Means Variances\n"; for ( comp_i = 0; comp_i < comp_num; comp_i++ ) { cout << "\n"; cout << setw(6) << comp_i; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { a[elem_i] = alpha[comp_i+elem_i*comp_max]; } mean = dirichlet_mean ( elem_num, a ); variance = dirichlet_variance ( elem_num, a ); for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { cout << setw(6) << elem_i << " " << setw(10) << alpha[comp_i+elem_i*comp_max] << " " << setw(10) << mean[elem_i] << " " << setw(10) << variance[elem_i] << "\n"; } delete [] mean; delete [] variance; } mean = dirichlet_mix_mean ( comp_max, comp_num, elem_num, alpha, comp_weight ); r8vec_print ( elem_num, mean, " Element means:" ); delete [] mean; // // Sample the distribution. // comp_sample = new int[sample_num]; x_sample = new double[elem_num*sample_num]; cout << "\n"; cout << " Number of samples is " << sample_num << "\n"; for ( sample_i = 0; sample_i < sample_num; sample_i++ ) { x = dirichlet_mix_sample ( comp_max, comp_num, elem_num, alpha, comp_weight, seed, comp_i ); for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { x_sample[elem_i+sample_i*elem_num] = x[elem_i]; } comp_sample[sample_i] = comp_i; delete [] x; } // // Print some results. // cout << "\n"; cout << " First few samples:\n"; cout << "\n"; cout << " Sample Component X\n"; cout << "\n"; for ( sample_i = 0; sample_i < i4_min ( sample_num, 10 ); sample_i++ ) { cout << " " << setw(2) << sample_i << " " << setw(2) << comp_sample[sample_i]; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { cout << " " << setw(10) << x_sample[elem_i+sample_i*elem_num]; } cout << "\n"; } delete [] comp_sample; delete [] x_sample; // // Compute the observed averages. // mean = r8col_mean ( sample_num, elem_num, x_sample ); variance = r8col_variance ( sample_num, elem_num, x_sample ); cout << "\n"; cout << " Element Observed mean, variance\n"; cout << "\n"; for ( elem_i = 0; elem_i < elem_num; elem_i++ ) { cout << setw(6) << elem_i << " " << setw(10) << mean[elem_i] << " " << setw(10) << variance[elem_i] << "\n"; } delete [] mean; delete [] variance; return; # undef COMP_MAX # undef COMP_NUM # undef ELEM_NUM # undef SAMPLE_NUM } //****************************************************************************80 void timestamp ( ) //****************************************************************************80 // // Purpose: // // TIMESTAMP prints the current YMDHMS date as a time stamp. // // Example: // // 31 May 2001 09:45:54 AM // // Licensing: // // This code is distributed under the MIT license. // // Modified: // // 08 July 2009 // // Author: // // John Burkardt // { # define TIME_SIZE 40 static char time_buffer[TIME_SIZE]; const struct std::tm *tm_ptr; std::time_t now; now = std::time ( NULL ); tm_ptr = std::localtime ( &now ); std::strftime ( time_buffer, TIME_SIZE, "%d %B %Y %I:%M:%S %p", tm_ptr ); std::cout << time_buffer << "\n"; return; # undef TIME_SIZE }