math2603_2022

MATH 2603,
"Topics in Scientific Computing: Optimal Control for Biological Models",
University of Pittsburgh, Fall semester 2022,
Instructor: Professor Catalin Trenchea, (Thackeray 612)
Computing assistant: John Burkardt (Thackeray 618).

https://people.sc.fsu.edu/~jburkardt/classes/math2603_2022/math2603_2022.html

This class meets on Monday, Wednesday, Friday, 1:00 to 1:50, in room 524, Thackeray Hall.

The textbook for the class is.

• Suzanne Lenhart, John Workman,
  Optimal Control Applied to Biological Models,
  Chapman and Hall, 2007
  LC: QH324.8.L46,
  ISBN: 978-1-58488-640-2

There are 14 computational lab projects associated with the book. Each lab is implemented as a pair of MATLAB files, a "code" file and a "lab" file. These can be downloaded from https://web.math.utk.edu/~lenhart/mfiles.d/

Source Code:

Each problem is defined by a "code" file.

• code01.m, "Introductory Example"
• code02.m, "Mold and Fungicide"
• code03.m, "Bacteria"
• code04.m, "Bounded Case"
• code05.m, "Cancer"
• code06.m, "Fish Harvesting"
• code07.m, "Epidemic Model"
• code08.m, "HIV Treatment"
• code09.m, "Bear Populations"
• code10.m, "Glucose Model"
• code11.m, "Timber Harvesting"
• code12.m, "Bioreactor"
• code13.m, "Predator Prey Model"
• code14.m, "Invasive Plant Species"

Each problem has "lab" file, an interactive interface that requests the appropriate input values, and plots the results.

• lab01.m, "Introductory Example"
• lab02.m, "Mold and Fungicide"
• lab03.m, "Bacteria"
• lab04.m, "Bounded Case"
• lab05.m, "Cancer"
• lab06.m, "Fish Harvesting"
• lab07.m, "Epidemic Model"
• lab08.m, "HIV Treatment"
• lab09.m, "Bear Populations"
• lab10.m, "Glucose Model"
• lab11.m, "Timber Harvesting"
• lab12.m, "Bioreactor"
• lab13.m, "Predator Prey Model"
• lab14.m, "Invasive Plant Species"